Bounds for Shannon and Zipf‐Mandelbrot entropies

Shannon and Zipf‐Mandelbrot entropies have many applications in many applied sciences, for example, in information theory, biology and economics, etc. In this paper, we consider two refinements of the well‐know Jensen inequality and obtain different bounds for Shannon and Zipf‐Mandelbrot entropies. First of all, we use some convex functions and manipulate the weights and domain of the functions and deduce results for Shannon entropy. We also discuss their particular cases. By using Zipf‐Mandelbrot laws for different parameters in Shannon entropies results, we obtain bounds for Zipf‐Mandelbrot entropy. The idea used in this paper for obtaining the results may stimulate further research in this area, particularly for Zipf‐Mandelbrot entropy.     

The intermediate disorder regime for a directed polymer model on a hierarchical lattice

We study a directed polymer model defined on a hierarchical diamond lattice, where the lattice is constructed recursively through a recipe depending on a branching number $b\in \mathbb{N}$ and a segment number $s\in \mathbb{N}$. When $b\le s$ it is known that the model exhibits strong disorder for all positive values of the inverse temperature $\beta$, and thus weak disorder reigns only for $\beta =0$ (infinite temperature). Our focus is on the so-called intermediate disorder regime in which the inverse temperature $\beta \equiv {\beta }_n$ vanishes at an appropriate rate as the size $n$ of the system grows. Our analysis requires separate treatment for the cases $b<s$ and $b=s$. In the case $b<s$ we prove that when the inverse temperature is taken to be of the form ${\beta }_n=\stackrel{?}{\beta }{(b/s)}^{n/2}$ for $\stackrel{?}{\beta }>0$, the normalized partition function of the system converges weakly as $n\to \infty$ to a distribution $L\left(\stackrel{?}{\beta }\right)$ and does so universally with respect to the initial weight distribution. We prove the convergence using renormalization group type ideas rather than the standard Wiener chaos analysis. In the case $b=s$ we find a critical point in the behavior of the model when the inverse temperature is scaled as ${\beta }_n=\stackrel{?}{\beta }/n$; for an explicitly computable critical value ${\kappa }_b>0$ the variance of the normalized partition function converges to zero with large $n$ when $\stackrel{?}{\beta }\le {\kappa }_b$ and grows without bound when $\stackrel{?}{\beta }>{\kappa }_b$. Finally, we prove a central limit theorem for the normalized partition function when $\stackrel{?}{\beta }\le {\kappa }_b$.     

Symbolic–numeric computation of orthogonal polynomials and Gaussian quadratures with respect to the cardinal <Emphasis Type="Italic">B</Emphasis>-spline

The first 60 coefficients in the three-term recurrence relation for monic polynomials orthogonal with respect to cardinal B-splines φ _m as the weight functions on [0, m] (m ∈ ?) are obtained in a symbolic form. They enable calculation of parameters, nodes, and weights, in the corresponding Gaussian quadrature up to 60 nodes. The efficiency of these Gaussian quadratures is shown in some numerical examples. Finally, two interesting conjectures are stated.     

Stochastic upscaling of random microstructures

In this work we present an upscaling technique for multi-scale computations based on random microstructures modelled as realisations of lognormally distributed random fields, or described by randomly distributed inclusions in a homogeneous matrix. Their corresponding coarse-scale model parameters are considered as uncertain, and are approximated by random variables, the distributions of which are obtained via polynomial chaos based Bayesian procedures in which the fine-scale energy is used as an observation. (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Solving the robust two-stage capacitated facility location problem with uncertain transportation costs

In this study, we start from a multi-source variant of the two-stage capacitated facility location problem (TSCFLP) and propose a robust optimization model of the problem that involves the uncertainty of transportation costs. Since large dimensions of the robust TSCFLP could not be solved to optimality, we design a memetic algorithm (MA), which represents a combination of an evolutionary algorithm (EA) and a modified simulated annealing heuristic (SA) that uses a short-term memory of undesirable moves from previous iterations. A set of computational experiments is conducted to examine the impact of different protection levels on the deviation of the objective function value. We also investigate the impact of variations of transportation costs that may occur on both transhipment stages on the total cost for a fixed protection level. The obtained results may help in identifying a sustainable and efficient strategy for designing a two stage capacitated transportation network with uncertain transportation costs, and may be applicable in the design and management of similar transportation networks.     

J-means and I-means for minimum sum-of-squares clustering on networks

Given a graph, the Edge minimum sum-of-squares clustering problem requires finding p prototypes (cluster centres) by minimizing the sum of their squared distances from a set of vertices to their nearest prototype, where a prototype can be either a vertex or an inner point of an edge. In this paper we have implemented Variable neighborhood search based heuristic for solving it. We consider three different local search procedures, K-means, J-means, and a new I-means heuristic. Experimental results indicate that the implemented VNS-based heuristic produces the best known results in the literature.     

Benefiting from information-rich multi-frequency AC voltammetry coupled with chemometrics on the example of on-line monitoring of leveler component of electroplating bath

Simultaneous application of multiple sinusoidal waveforms perturbations superimposed onto DC staircase step significantly enriches current response. The measured current is characterized by a matrix of data rather than a conventional voltammetric output in a form of a vector. This increase of the dimensionality of the current response and therefore the wealth of analytical information is achieved without compromising the time of analysis. The natural approach for compression of such data and extraction of relevant information is by utilizing multi-way chemometric decomposition techniques. An electroplating solution presents a very challenging analyte for electroanalysis as its constituents interact synergistically with each other during both the plating process and its simulation during electroanalysis. For some components the mechanism is not entirely understood. Therefore, the only way to benefit from the analytical data is by employing soft modeling. The electrode processes involving additives rely heavily on adsorption and, indirectly, on electron transfer kinetics for which AC voltammetry is an analytical technique capable of delivering informative signals. This paper presents a rigorous universal method for calculating and validating an exemplary multi-way calibration of a leveler component in a copper electroplating bath used in the semiconductor industry. The method presented employs comparatively Parallel Factor Analysis coupled with Inverse Least Squares Regression and multi-linear Partial Least Squares. The calibration training set consists of multi-frequency AC voltammetric data subjected to pretreatments aiming to select informative independent variables and exclude outliers.     

Cytotoxicity of Amino-BODIPY Modulated via Conjugation with 2-Phenyl-3-Hydroxy-4(1H)-Quinolinones

The combination of cytotoxic amino-BODIPY dye and 2-phenyl-3-hydroxy-4(1H)-quinolinone (3-HQ) derivatives into one molecule gave rise to selective activity against lymphoblastic or myeloid leukemia and the simultaneous disappearance of the cytotoxicity against normal cells. Both species′ conjugation can be realized via a disulfide linker cleavable in the presence of glutathione characteristic for cancer cells. The cleavage liberating the free amino-BODIPY dye and 3-HQ derivative can be monitored by ratiometric fluorescence or by the OFF-ON effect of the amino-BODIPY dye. A similar cytotoxic activity is observed when the amino-BODIPY dye and 3-HQ derivative are connected through a non-cleavable maleimide linker. The work reports the synthesis of several conjugates, the study of their cleavage inside cells, and cytotoxic screening.     

Investigating the Disordered and Membrane-Active Peptide A-Cage-C Using Conformational Ensembles

The driving forces and conformational pathways leading to amphitropic protein-membrane binding and in some cases also to protein misfolding and aggregation is the subject of intensive research. In this study, a chimeric polypeptide, A-Cage-C, derived from α-Lactalbumin is investigated with the aim of elucidating conformational changes promoting interaction with bilayers. From previous studies, it is known that A-Cage-C causes membrane leakages associated with the sporadic formation of amorphous aggregates on solid-supported bilayers. Here we express and purify double-labelled A-Cage-C and prepare partially deuterated bicelles as a membrane mimicking system. We investigate A-Cage-C in the presence and absence of these bicelles at non-binding (pH 7.0) and binding (pH 4.5) conditions. Using in silico analyses, NMR, conformational clustering, and Molecular Dynamics, we provide tentative insights into the conformations of bound and unbound A-Cage-C. The conformation of each state is dynamic and samples a large amount of overlapping conformational space. We identify one of the clusters as likely representing the binding conformation and conclude tentatively that the unfolding around the central W23 segment and its reorientation may be necessary for full intercalation at binding conditions (pH 4.5). We also see evidence for an overall elongation of A-Cage-C in the presence of model bilayers.